Supporting Scripts

• Biogeochemisty JSON Generator
  • Step 1: Identify the chemical pools
  • Step 2: Identify reactions
  • Step 3: Characterize the reaction kinetics
  • Step 4: Convert diagram to OpenWQ input file
• Automatic Model Configuration
  • Location
  • Quick start
  • Configuration parameters
  • Module configuration
  • Source/sink configuration
  • Output configuration
  • Generated files
  • Docker settings (Section 8)
  • Report generation (Section 9)
  • Docker support
  • Tips
• Sink-Source JSON Generator
  • Manual creation
• Reading and Visualizing Model Outputs
  • Location
  • Quick start
  • Reading HDF5 outputs
  • Creating time-series plots
  • Creating spatial maps
  • GIF creation requirements
  • Complete example
  • Troubleshooting